PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003892m
Common NameCICLE_v10003892mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 323aa    MW: 36957.8 Da    PI: 6.3272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003892mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123961323
                     ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                     C+   Cgk+F +  +L++H  +H
  Ciclev10003892m 39 CSyeGCGKTFIDAASLRKHAHSH 61
                     77779**************9888 PP

2zf-C2H222.62.7e-0785109123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+Cp   Cgk Fs   nL++H++tH
  Ciclev10003892m  85 YVCPheGCGKAFSLDFNLRSHMKTH 109
                      99**********************9 PP

3zf-C2H2187.8e-06115139123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dCgk++ + + Lk+Hi +H
  Ciclev10003892m 115 HICPypDCGKRYAHEYKLKNHIASH 139
                      679999*****************96 PP

4zf-C2H213.20.00026178203123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y Cp   C k + + + Lk H+++ H
  Ciclev10003892m 178 YACPyeGCEKAYIHEYKLKLHLKReH 203
                      89*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.4E-133263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00553761IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8033766IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-63862No hitNo description
PROSITE patternPS0002803961IPR007087Zinc finger, C2H2
SuperFamilySSF576677.21E-1371119No hitNo description
Gene3DG3DSA:3.30.160.605.7E-1871111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.7E-485109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.88285114IPR007087Zinc finger, C2H2
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-8112139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028115139IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473115144IPR007087Zinc finger, C2H2
PROSITE patternPS000280117140IPR007087Zinc finger, C2H2
SuperFamilySSF576679.09E-6173201No hitNo description
Gene3DG3DSA:3.30.160.603.8E-9174200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012178203IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66178208IPR007087Zinc finger, C2H2
PROSITE patternPS000280180203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSFVRLCSEK TLKALKEKAK EPEAPEPEPE PTTEVLFLCS YEGCGKTFID AASLRKHAHS  60
HGERQYQCHW KVKRHFLIHT GERDYVCPHE GCGKAFSLDF NLRSHMKTHS QENYHICPYP  120
DCGKRYAHEY KLKNHIASHH EKNAAVEVPR YATPPERITK TPKPPAGVYG SASSERPYAC  180
PYEGCEKAYI HEYKLKLHLK REHPGHMSDE NAENATTNAN NEMDEGSDQD AYAGKRVNGK  240
SQKQSRAKPN LKMPPAKVTQ RKSSTPSPAT LNVVRKQQWT PKEEVYEEED SEETEEDRDN  300
VEDGFRYGEN NEDDDEETEY ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-28391398119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431736.10.0hypothetical protein CICLE_v10003892mg
SwissprotQ2V3L31e-122Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLV4T5Z30.0V4T5Z3_9R
STRINGPOPTR_0004s23050.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-111C2H2 family protein